Sorry, you need to enable JavaScript to visit this website.

Differential Flux Balance Analysis of Quantitative Proteomic Data on Protein Interaction Networks

Error message

  • The specified file temporary://fileeABKYj could not be copied, because the destination directory is not properly configured. This may be caused by a problem with file or directory permissions. More information is available in the system log.
  • The specified file temporary://filerJe1tw could not be copied, because the destination directory is not properly configured. This may be caused by a problem with file or directory permissions. More information is available in the system log.
  • The specified file temporary://file0P3TjA could not be copied, because the destination directory is not properly configured. This may be caused by a problem with file or directory permissions. More information is available in the system log.
  • The specified file temporary://file7sdWUG could not be copied, because the destination directory is not properly configured. This may be caused by a problem with file or directory permissions. More information is available in the system log.
  • The specified file temporary://fileoZPxdq could not be copied, because the destination directory is not properly configured. This may be caused by a problem with file or directory permissions. More information is available in the system log.
  • The specified file temporary://fileyr6NcI could not be copied, because the destination directory is not properly configured. This may be caused by a problem with file or directory permissions. More information is available in the system log.
  • The specified file temporary://fileQr5y6c could not be copied, because the destination directory is not properly configured. This may be caused by a problem with file or directory permissions. More information is available in the system log.
  • The specified file temporary://filetzNIZf could not be copied, because the destination directory is not properly configured. This may be caused by a problem with file or directory permissions. More information is available in the system log.
Citation Author(s):
David F. Gleich, Michael Gribskov
Submitted by:
Biaobin Jiang
Last updated:
23 February 2016 - 1:44pm
Document Type:
Presentation Slides
Document Year:
2015
Event:
Presenters:
Biaobin Jiang
 

Protein fluxes provide a more refined notion of protein abundance than raw counts alone by considering potential channels based on protein interaction networks. We propose a novel method to estimate protein fluxes in a protein interaction network using a linear programming model based on the framework of flux balance analysis. When we combine this estimate of protein fluxes with a protein-centric network measure, inspired by egocentric network analysis in sociology, we discover that the fluxes of proteins encoded by hypermutated genes in colon cancer have substantially higher alterations in cancer cells than the protein quantities alone. These alterations remain statistically significant under different network perturbations. We conclude that the importance of a change in the quantity of a protein is determined not only by the protein itself, but also by its network neighbors.

up
0 users have voted: