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Unsupervised Drift Compensation Based on Information Theory for Single-Molecule Sensors

Abstract: 

Single-molecule sensors record molecular dynamics in the form of time series representing a stochastic trajectory in the space of molecular conformational states. One of the main challenges in modeling this trajectory is to suppress the sensor baseline drift, especially in high-throughput and long acquisitions that are characteristic of single-molecule field-effect transistor sensors (smFETs). In this work, a multiscale signal compression technique based on the minimum description length principle, combined with an adaptive piece-wise cubic interpolation, is implemented to address the problem of baseline modeling through a blind source separation framework. Tests on simulated single-molecule traces over a large space of parameters (kinetics, noise, drift) show that the proposed algorithm accurately estimates the sensor baseline, including for signals with high and mixed noises, concept drifts, and various shapes and rates of baseline drifts, without prior knowledge of the sensor parameters or molecular kinetics.

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Paper Details

Authors:
Mohamed OUQAMRA, Delphine BOUILLY
Submitted On:
13 October 2019 - 2:00pm
Short Link:
Type:
Poster
Event:
Presenter's Name:
Mohamed OUQAMRA
Paper Code:
175
Document Year:
2019
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Document Files

Mohamed_Ouqamra_MLSP2019_Unsupervised Drift Compensation Based on Information Theory for Single molecule Sensors

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[1] Mohamed OUQAMRA, Delphine BOUILLY, "Unsupervised Drift Compensation Based on Information Theory for Single-Molecule Sensors", IEEE SigPort, 2019. [Online]. Available: http://sigport.org/4858. Accessed: Nov. 18, 2019.
@article{4858-19,
url = {http://sigport.org/4858},
author = {Mohamed OUQAMRA; Delphine BOUILLY },
publisher = {IEEE SigPort},
title = {Unsupervised Drift Compensation Based on Information Theory for Single-Molecule Sensors},
year = {2019} }
TY - EJOUR
T1 - Unsupervised Drift Compensation Based on Information Theory for Single-Molecule Sensors
AU - Mohamed OUQAMRA; Delphine BOUILLY
PY - 2019
PB - IEEE SigPort
UR - http://sigport.org/4858
ER -
Mohamed OUQAMRA, Delphine BOUILLY. (2019). Unsupervised Drift Compensation Based on Information Theory for Single-Molecule Sensors. IEEE SigPort. http://sigport.org/4858
Mohamed OUQAMRA, Delphine BOUILLY, 2019. Unsupervised Drift Compensation Based on Information Theory for Single-Molecule Sensors. Available at: http://sigport.org/4858.
Mohamed OUQAMRA, Delphine BOUILLY. (2019). "Unsupervised Drift Compensation Based on Information Theory for Single-Molecule Sensors." Web.
1. Mohamed OUQAMRA, Delphine BOUILLY. Unsupervised Drift Compensation Based on Information Theory for Single-Molecule Sensors [Internet]. IEEE SigPort; 2019. Available from : http://sigport.org/4858