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GDSPIKE: AN ACCURATE SPIKE ESTIMATION ALGORITHM FROM NOISY CALCIUM FLUORESCENCE SIGNALS

Citation Author(s):
Jilt Sebastian, Mari Ganesh Kumar, Y. S. Sreekar, Rajeev Vijay Rikhye, Mriganka Sur, Hema A. Murthy
Submitted by:
Jilt Sebastian
Last updated:
7 March 2017 - 1:28pm
Document Type:
Poster
Document Year:
2017
Event:
Presenters:
JILT SEBASTIAN
Paper Code:
ICASSP1701
 

Accurate estimation of spike train from calcium (Ca2+) fluorescence signals is challenging owing to significant fluctuations of fluorescence level. This paper proposes a non-model-based approach for spike train inference using group delay (GD) analysis. It primarily exploits the property that change in Ca2+ fluorescence corresponding to a spike can be characterized by an onset, an attack, and a decay. The proposed algorithm, GDspike, is compared with state-of-the-art systems on five datasets. F-measure is best for GDspike (41%) followed by STM (40%), MLspike (39%), and Vogelstein (35%). While existing methods are inspired by the physiology of neuronal responses, the proposed approach is inspired by GD-based high-resolution processing of the Ca2+ fluorescence signal. GDspike is a fast and unsupervised algorithm. It is unaffected by the scanning rate and indicator protein/dye.

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