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Brain tumor can be a fatal disease in the world. With the aim of improving survival rates, many computerized algorithms have been proposed to assist the pathologists to make a diagnosis, using Whole Slide Pathology Images (WSI). Most methods focus on performing patch-level classification and aggregating the patch-level results to obtain the image classification. Since not all patches carry diagnostic information, it is thus important for our algorithm to recognize discriminative and non-discriminative patches.

Numerous recent papers have demonstrated the utility of graph theoretical analysis in conjunction with sparse inverse covariance estimation (SICE) in understanding the modulation of brain connectivity associated with neuropathology. These concepts may complement established knowledge of functional covariance obtained using principal component analysis (PCA) that can reduce whole data representations of brain data to essential disease specific patterns.

Detection of cell nuclei in microscopic images is a challenging research topic, because of limitations in cellular image quality and diversity of nuclear morphology, i.e. varying nuclei shapes, sizes, and overlaps between multiple cell nuclei. This has been a topic of enduring interest with promising recent success shown by deep learning methods. These methods train for example convolutional neural networks (CNNs) with a training set of input images and known, labeled nuclei locations. Many of these methods are supplemented by spatial or morphological processing.

We propose a new multiclass weighted loss function for instance segmentation of cluttered cells. We are primarily motivated by the need of developmental biologists to quantify and model the behavior of blood T-cells which might help us in understanding their regulation mechanisms and ultimately help researchers in their quest for developing an effective immunotherapy cancer treatment.

We present a region based method for segmenting and splitting
images of cells in an automatic and unsupervised manner.
The detection of cell nuclei is based on the Bradley’s method.
False positives are automatically identified and rejected based
on shape and intensity features. Additionally, the proposed
method is able to automatically detect and split touching cells.
To do so, we employ a variant of a region based multi-ellipse
fitting method (DEFA) that makes use of constraints on the

Retinal vessel information is helpful in retinal disease screening and diagnosis. Retinal vessel segmentation provides useful information about vessels and can be used by physicians during intraocular surgery and retinal diagnostic operations. Convolutional neural networks (CNNs) are powerful tools for classification and segmentation of medical images. However, complexity of CNNs makes it difficult to implement them in portable devices such as binocular indirect ophthalmoscopes. In this paper a simplification approach is proposed for CNNs based on combination of quantization and pruning.

Colonoscopy video frames might be contaminated by bright spots with unsaturated values known as specular reflection. Detection and removal of such reflections could enhance the quality of colonoscopy images and facilitate diagnosis procedure. In this paper, we propose a novel two-phase method for this purpose, consisting of detection and removal phases. In the detection phase, we employ both HSV and RGB color space information for segmentation of specular reflections.

The need for CT scan analysis is growing for diagnosis and therapy of abdominal organs. Automatic organ segmentation of abdominal CT scan can help radiologists analyze the scans faster, and diagnose disease and injury more accurately. However, existing methods are not efficient enough to perform the segmentation process for victims of accidents and emergency situations. In this paper, we propose an efficient liver segmentation with our 3D to 2D fully convolution network (3D-2D-FCN). The segmented mask is enhanced using the conditional random field on the organ’s border.